ID/CA | from Chip Morrison | 02:12 PM 8/2/2005
Brigger, Please explain, in simple terms, the difference between Intelligent Design and Cosmic Ancestry.... Thank you. Morrison...
from Brig Klyce to Chip Morrison | Wed, 03 Aug 2005 11:47:44 -0500: Dear Chip -- your timing is excellent, given George W. Bush's recent endorsement of ID....In brief, ID says that there must have been a miracle for life to originate, and other miracles for it to evolve from the simplest forms all the way to higher plants and animals.
CA agrees that these phenomena are not well accounted for by neodarwinism (ND).
But CA points out that the origin of life is not an observed phenomenon, only a firmly held belief. Firmly held by both ID and ND! The same is true of evolution, if you deconstruct it carefully. The evolutionary progress that takes life to higher forms is driven by the acquisition of new genetic programs for the features that higher forms have and lower forms lack. Both ID and ND attempt to account for the origins of these programs, ID by miracles, ND by science.
Many genetic programs are acquired by gene transfer. This fact already is a blow to ND, because in some cases the source species has no need or use for the program. If not, the ND account for its origin doesn't work.
But the origin of the programs is seldom even claimed to be observed. In 2000, W. Ford Doolittle even admitted, "Many eukaryotic genes ...seem to have come from nowhere."
Admittedly, programs can get *optimized* by ND processes. Optimization is also easily demonstrated in computer models. Not so for composing new programs for unforseeable, complex features.
So CA supposes that these things -- 1) life in the first place and 2) genetic programs for complex features -- never "originated." Maybe they always existed. If so, ID is right to assert that ND doesn't account for them. But ID is wrong to say that we must therefore resort to miracles. Interestingly, both sides agree that ID and ND are the only two choices, and both love the big bang, because it supports the dilemma.
CA contains no miracles, but it requires an amendment to the big bang theory. Life, even highly evolved, must have always existed. Having lived with this concept for years now, I find it no harder to accept than the existence of the universe. The existence of a physical universe is unexplained by science (even if it it began with a standard big bang.) Life is in the same category for me. Science doesn't explain it. But if it always existed, then there's no miracle in the finite past that needs explaining. Thus scientific faith is sustained.
These views are elaborated on the website, if you feel like poking around. Thanks for your interest. Comments invited....Brig Klyce | Astrobiology Research Trust
from Chip Morrison | 05:40 PM 8/3/2005: I need to find out more about Intelligent Design. Could not Nature be the intelligent designer? Is Nature too stupid for that? Not up to the task? I agree that Nature sometimes blunders. Does the Intelligent Designer also blunder? Or is that just Nature? Nature getting in the way?
from Brig: I know that ID requires miracles. Miracles cannot be investigated scientifically. So how ID works is not clear to me. Nature could only do it if Nature has a mind. ID is really just creationism made more palatable, they hope. (There are neodarwinists who think life is an inevitable result of properties of matter. That would be Nature I guess. But where's the evidence?)
from Chip: Also, you need to explain to me why it is necessary for CA that these genetic programs have always existed. From what I remember of the first paper of yours I read, a chief argument was that there hasn't been sufficient time for Nature to have developed the programs on Earth. If the programs come from afar, that solves the problem of time, assuming more time in other parts of the universe. But why does CA require that the programs always existed? Not enough time elsewhere?
Here I'm with the creationists. Suppose astronauts come upon a Chrysler Building standing on Venus. Venus hasn't existed long enough for a Chrysler Building to self-assemble by chance. But if you had forever? In forever anything can happen, right? Sorry, I'm not buying it. Even forever isn't long enough.(An interesting sidetrack: Mars has existed long enough too have a grand canyon whose exact specifications are probably as detailed as those of the Chrysler Building. How is the Chrysler Building different? Creationist William Dembski writes about this. "Complex Specified Information".)
That argument works for "the origin of life." For evolution to ever higher forms after that, I think there's a second-law-of-thermodynamics equivalent that prevents it. True, now the number of possibilities can be counted. But the number for a single gene is like 4^1000 or about 10^600. (Try http://www.panspermia.org/proof5.htm)
Also, I need to be clear. You agree that life forms have evolved on Earth, but with a sort of assist from external sources. Universe is teeming with life, Earth is open system, life forms from afar mingle with life forms here, producing forms that could not have evolved using only local material. Is this correct?
Yes. Although once the material arrives, then it's local. And it could arrive long before it's deployed.
BTW, I don't see that gene transfer is blow to ND, just because programs are not always useful. Should be okay, as long as not harmful?
How did the gene acquire the program it needs in the recipient species, when, sometimes, there was no selective pressure to write the program in the donor species? Another unanswered question for ND.... President Bush backs the teaching of Intelligent Design — our related What'sNEW item, 4 Aug 2005.
An infinite universe | from Mark Mukai-Warner | Tue, 2 Aug 2005 11:33:38 EDT
Dear Mr. Klyce, I am a suststainable development design consultant and teacher who is currently working on a series of science fiction novels. In my research for the novels I came accross your discussion on the 'META' site and found it most interesting.
I must say that I fully appreciate how difficult it is to present an idea that is so contrary to most peoples' fundamental world view, and how vehement can be their antagonistic reactions. I am truely grateful for people like yourself who refuse to give in.
I grew up with the impression (as I'm sure most people do) that the Big Bang theory was fact, but it never 'felt' right to me. Discovering the Steady State theory was a revalation. Upon further research and reflection I came to understand how deeply rooted the creationist paradigm is in the western (and unfortunately increasingly global) psyche. When I was a kid I remember being told that if people try to think about infinity too much they could go mad. I've thought about it a lot - it is to my mind very comprehendable; either that, or I have gone mad!
To me (as an interested lay-person), the BB theory is synonymous with creationism. The SS theory 'feels' right (very unscientific of me, I know, but science is just a toolbox, one of many).
My point is that I happily go along with your 'Cosmic Ancestry' idea. I know you don't subscribe (publicly) to any particular cosmological theory, but you do propose that life has no particular 'origin', which suggests time without beginning and that equates to my understanding of the SS theory.
I am a practicing Buddhist (I hope to get it right, one day) and one of the reasons I was attracted to Buddhism (along with there being no god or rules) was its cosmology. Buddhist texts describe the universe as eternal, infinite, unbounded and describing cosmic cycles. Buddhist philosophy is one of life, the very nature of reality, and embraces all other religions, science, and philosophies within the Mystic Law. Put very simplisticly, the Mystic Law states that there is infinite potential for and temporary manifestation of all phenomena. Phenomena arise through cause and effect. Phenomena exist, or they don't exist - the ultimate reality is neither existence nor nonexistence, but exhibits the qualities of both.
I'd like to recommend an excellent book, a dialogue between Chandra Wickramasinghe and Daisaku Ikeda, called 'Space and Eternal Life' (Journeyman Press, 1998, ISBN 1 851720 60) which I believe you may find of interest. [Another look at your website shows me an essay by Mr. Wickramasinghe and yourself, you may already be aware of the aforementioned book].
My reason for writing to you is to make contact, say thank you, offer moral support and, maybe, engage in dialogue. As I stated above, I am writing a series of SF novels. It is my wish to tell a story of human integration into galactic society, set within an infinite and eternal universe. 'Panspermia' is the the way life spreads and is, at the material level, what unites all sentient species. I would be interested in having some professional opinion and constructive criticism on how I deal with these issues. In return, I would like to do what I can to bring such issues further into the public domain through the medium of literature.
With my deep respect, Mark Mukai-Warner META vs Cosmic Ancestry contains discussions with the mentioned group, 28 April - 1 May 2000.
Evo-devo | from Stan Franklin | 09:02 AM 7/25/2005
Brig, Does evolutionary developmental biology (http://www.answers.com/topic/evolutionary-developmental-biology) speak at all to your quest for genetic novelty. They’re concerned with morphological novelty. Would that constitute a genetic jump in your sense? Or, an explanation for the lack of such jumps? ...Stan
Stan Franklin | Computer Science | The University of Memphis
From Brig Klyce | 10:14 AM 7/25/2005: Dear Stan -- Thanks for keeping this question in mind. Yes, I think that changed morphologies and increased or decreased numbers of body segments can be achieved without new genetic programs, with things like regulatory changes instead. These might come from point mutations, gene duplications, or maybe even no sequence changes at all (Could cytoplasmic chemistry changes in response to environmental factors have regulatory effects on development?)
But I think it is obvious that new genetic programs are needed for almost any new evolutionary feature (photosynthesis, eyes, etc.). Evo-devo does not even suggest, to my knowledge, how these could be written.... Brig Klyce | Astrobiology Research Trust
Neo-Darwinism... is a related CA webpage.
Woodstock of Evolution | From Brig Klyce to Dr. Michael Shermer | 15 Jul 2005
[Alerting him to the What'sNEW item of 14 Jul 2005, about his article in Scientific American and inviting him to comment.]
from Dr. Michael Shermer | 09:44 AM 7/18/2005: Brig, I haven't any idea why you would "have certain objections" to my report on the evolution conference, and when I clicked on the link you provided there was nothing there about my report. ...Michael Shermer
from Brig Klyce | 18 Jul 2005: Dear Michael -- Thanks for your response. I'm very sorry for the omission. The correct link is [http://www.panspermia.org/whatsne38.htm#050714] ...Brig
from Brig Klyce | 22 Jul 2005: Can't tell if this reached you. I believe the issue mentioned is important. Any chance I could interest you in it?
from Dr. Michael Shermer | Fri, 22 Jul 2005 11:37:35 -0400: Brig, I received the link and read your comments. Thanks, but I have no additional comments. ...Michael
from Brig Klyce | 23 Jul 2005: Dear Michael -- Thanks for acknowledging. Your no-comment is interesting. Would you mind if I post your [above] email on my site, linked from the news item it pertains to? ...Thanks. ...Brig
from Dr. Michael Shermer | Sat, 23 Jul 2005 14:36:23 -0400: Brig, Post what comment? That I had no comment? What's the reason for that? I'm not an evolutionary biologist. I was simply reporting on the conference. If you want to engage in debate on the topics on your web page, you should do so with professionals in those areas. ...Michael
from Brig Klyce | 24 Jul 2005: Dear Michael -- I took issue with the logic in your own statement about evolution. You do not wish to defend your logic. This would be unremarkable if you were not also a self-designated and recognized spokesman for mainstream darwinian theory, making the statement in Scientific American. As you are aware, I do attempt to discuss this issue with other professionals like Dawkins. He replied with silence as well. In my experience, darwinists often simply ignore the difficulties. I find that puzzling and frustrating, but noteworthy. ...Brig
Michael Shermer, information at Skeptic Magazine website.
Brig Klyce, "Dear Dr. Dawkins" [doc], my attempt to discuss this issue with Dawkins (copied to Shermer), 4 Jan 2005.
The World Summit on Evolution is the related What'sNEW item, 14 Jul 2005.
Right Questions, Wrong Answers. | from Gabriel Manzotti
Fri, 1 Jul 2005 12:46:47 +0200 (CEST)
Dear Brig, The last "Reply" suggests that there are indeed "Right answers" in Cosmology and Fred Hoyle in these field put the right questions but gave the "Wrong answers". So far so good! Please let me check the lesson. According to the Scientific Community the "Right answers" are that we certainly live in a Big Bang Universe which bootstrapped in a some acausal way 13.7 +/- 1% Gyr ago, begin to expand being filled with radiation, ordinary matter, dark unconventional untested non baryonic matter, dark unconventional untested energy. All of these different contributions vary in time, in a way that leaves their sum equal to the closure density parameter of 1, which is the outcome of a never observable inflation phase. The last two entities, "dark" matter/energy, now represent 96% (Ninety-six %) of the global content of the universe. In this scenario, a unique, single, generation of galaxies evolved in a "bottom-up" way from "primordial fluctuations" superimposed to an overall smooth and homogeneous background expansion which at first decelerates then accelerates. In spite of the lack of definition in the initial conditions, the theory supply us with a remarkably precise time of evolution as the age of the universe is no longer an order of magnitude estimate, but is a true measurement ( +/- 1% according to WMAP satellite results) in compliance with the claimed turn to the "Precision Cosmology Age" (Peebles 2003).
Had you the impression that this set of involved assumptions are purposely aimed to sustain a cozy "World System" instead of reflecting reality, please remind that once they are dressed under the scientific politically correct form of a respectable seven (at least seven) parameters, falsifiable (?!?) theory, they lead to the "Right Answer" and Fred Hoyle who raised for a lifetime doubts against this apparently humongous straining of reality, was wrong!
Best regards, Gabriel Manzotti | MONZA | Italy | http://astrocultura.uai.it/personaggi/index.htm | http://astrocultura.uai.it/personaggi/hoyle1/Home.htm [...]
Guardian Unlimited... is the referenced Reply, 16 Jun 2005.
Fred Hoyle... is a related CA webpage.
Nature paper | from Christopher Rose | Thu, 23 Jun 2005 17:41:46 -0400
...I'm not sure whether you saw the following paper which appeared in Nature on 9/2/2004 (cover article). It does a quantitative workup of the relative efficiency of radiated vs. matter-based communication over interstellar distances. The article received quite a bit of press. After coming upon your site, I thought you might find it interesting.
http://www.winlab.rutgers.edu/~crose/cgi-bin/cosmicY.html
Cheers, Chris Rose
* Prof. Christopher Rose * Associate Director, Rutgers WINLAB * http://www.winlab.rutgers.edu/~crose
24 June 2005: Dear Chris -- Thanks for the alert. Yes, it's interesting. ...I have placed a pointer to the article on my webpage that mentions the Voyager phonograph record. I will be glad to learn about any future developments. Best regards. Brig
09:31 PM 6/24/2005: ...Again, interesting area. I'm still trying to find the technical meat for various arguments about messaging and panspermia, and your web site is a good starting point. Cheers, Chris
What Difference Does It Make? is the CA webpage that describes the Voyager phonograph record.
Guardian Unlimited: Right questions, wrong answers
from Jeff Nesin | Thu, 16 Jun 2005 13:06:55 +0000 (UTC)
...as two books trumpet Fred Hoyle's legacy, Tim Radford assesses a visionary scientist who went too far —
Tim Radford | Thursday, 16 June 2005 | The Guardian
Fred Hoyle was the man who worked out just how stars in a galaxy far away and long ago forged the carbon, oxygen, iron, silicon and other elements that became the molecules that became the organisms that ultimately turned into astronomers and accountants, authors and automatons. Fred Hoyle was also a wartime backroom radar scientist, a successful science fiction novelist, a colossal academic fighter and - in later life - a grade one batty boffin who argued that diseases were forged in space and delivered to Earth by comets and that the archaeopteryx specimen in London's Natural History Museum was a fake.
Fred Hoyle coined the phrase "the big bang" but intended it dismissively, clinging stubbornly to his belief that the universe had always been there. Colleagues often dismissed him as eccentric, but they also described him as "a towering figure", and brilliant.
Brilliant? His seven-part television series, A For Andromeda, launched Julie Christie in 1961. By the end of the sixth episode, 25% per cent of the UK population aged five and over were watching it. But he also clashed with another giant of astrophysics, Martin Ryle, and got the worst of a sometimes bitter argument. In the end, Hoyle fell into eclipse, and died in 2001. Then, after a four-year wait, two books have come along at once. The man mattered. He may have had the wrong answers, but he asked the right questions: what is this universe, and where did life come from?
Simon Mitton, an astronomer, a sometime student of Hoyle and himself a publisher, is the author of Fred Hoyle: A Life in Science (Aurum Press). He sees his subject as the outgoing, far-seeing figure who put British cosmology on the map, if only because he could see across the Atlantic. "He gave British astronomers, in the 1950s and early 1960s, [the impetus] to look to the US as a source of rich collaboration rather than a place of envious competition," says Mitton.
"People like Martin Ryle ... always regarded the US astronomical community basically as devils incarnate. It was Hoyle who said we have got to take these people seriously. Then in the late 1960s and 1970s he started the programme at the Institute of Theoretical Astronomy, inviting distinguished Americans to come over and interact with British graduate students. He got the funding to pay their air fares ... and salaries. He absolutely refounded theoretical astronomy in this country."
"When you bear in mind that at the present time a quarter of all the papers published by the Royal Astronomical Society are in cosmology, the theoretical cosmology output of this country is absolutely staggering," he adds. "Theory is the thing the Brits should try to be good at, because all the telescopes are overseas, and you only need a pencil and paper to do theory." People like Stephen Hawking went to Cambridge to do cosmology simply because Fred Hoyle was there. Martin Rees, astronomer royal, president elect of the Royal Society and master of Trinity College, began post-doctoral research in Hoyle's institute and has always felt warmly towards him.
Jane Gregory, author of Fred Hoyle's Universe (OUP), meanwhile, first talked to Hoyle in 1993 because she had begun a PhD on popularisation of science. "It was supposed to be on popularisation but I got kind of stuck with him because he was a great case study: he had a 50-year career and he had done the astronomy stuff, the biology stuff and the fiction," she says. "He ended up being a means by which I could look at different kinds of popularisation."
Gregory has her own theory for the fading of one of Britain's brightest luminaries. Hoyle never liked to let go of an idea until he had wrung everything from it. The ideas about life in space had been with Hoyle since the 1930s.
"So it's not something that came on him when he was going a bit batty in old age," she says. "It was something he'd been thinking about for 50 years by the time it got famous. If you've been working on an idea for 50 years, you don't walk away from it because your mates say it's a bit silly."
Martin Rees thinks that Hoyle espoused the idea that life began in space - the idea is known as panspermia, and it's a century old - because he liked the idea of a "steady state" universe that had always existed. The origin of life on Earth, and so far, only Earth, is one of the science's great unsolved riddles. Hoyle famously described the standard evolutionary explanation involving primordial soup and a warm little pond 3bn years ago as being as improbable as the assembly of a jet airliner during a hurricane in a junkyard. "With an infinite past, you could relegate the origin of life infinitely and forget about it," says Sir Martin. "I think the motivation for panspermia vanished once we had the big bang theory because the age of the universe then becomes only two or three times the age of the Earth. Fred is better known to the public for his advocacy of the steady state theory and his later eccentricities but his greatest lasting contribution is his pioneering work on the understanding of origin of the chemical elements, and how all the carbon, oxygen and iron that we are made of were synthesised in stars from pristine hydrogen. And that's his great achievement, I would say."
To buy Fred Hoyle: A Life in Science by Simon Mitton (Aurum Press, £18.99) for £17.99 and Fred Hoyle's Universe by Jane Gregory (Oxford, £20) for £18, both inc free UK postage, call Guardian book service on 0870 836 0875 or go to guardian.co.uk/bookshop.
Fred Hoyle... is a related CA webpage.
Information Theory, Evolution and the Origin of Life
to Hubert P. Yockey from Brig Klyce | 6:15 PM 5/17/2005
Dear Dr. Yockey -- I was very pleased to receive an advance copy of your new book. I read it carefully and posted a review on my website.... I especially noted your sentence: "Once life has appeared,... genetic messages will not fade away and can indeed survive for 3.85 billion years without assistance from an Intelligent Designer" (p 181, 184).
In my review I expressed disappointment that you didn't say much more about evolution: Where do new genetic programs come from, according to Information Theory? Now I wonder. Perhaps you think, as I do, that the genetic programs for all of higher life must already exist, in essence, from the beginning. You do not explicitly say so, but the quoted sentence implies it. Your comments are welcome.... Thank you.... Best regards. Brig
Reply to your e-mail of 5/17.2005 | from Hubert P. Yockey | Thu, 19 May 2005 10:35:01 EDT: Dear Dr. Klyce: How nice to receive your e-mail and your review of my book! ...I thought I gave the creationist/intelligent design folks, el momento de la verdad! I am more than skeptical about their essentially religious views. I started the book with the reference to Socrates to emphases that science is founded on measurement and mathematics not on faith. I criticized frequently scientists who based their conclusions on faith. As you know the founding fathers believed in the separation of church and state, First Amendment U S constitution: Congress shall make no law respecting the establishment of religion or restricting the free exercise thereof....
With regard to what is knowable please note the quotation of Niels Bohr on page 5. See also Chapter 11, Randomness, complexity, the unknowable and the impossible. These subjects are not understood by many scientists. They are often refereed to as "buzz words".
Michael Behe, who poses as a scientist, has done an enormous amount of damage. The argument in my book is based on publications by Gregory Chaitin, especially "Irreducible Complexity in Pure Mathematics". You may find this paper and download it from his home page. My theme in the book is that genetics works like a computer. Since the genome is read out to direct the formation of protein, the genetic message cannot be "irreducibly complex". Chaitin shows which sequences are "irreducibly complex" and those that are not. Of course this is far above Behe's head and of his creationist/intelligent design folks. You might find it useful to discuss my reasons why genetics is not "irreducibly complex" with one of your mathematicians. I suggest you go to Chaitin's web page and print out some of his papers on complexity and irreducibility. Try these ideas on your friends! The origin of life, like the origin of the universe, is unknowable. If life were just complicated chemistry, as Jeffrey L. Bada teaches his students, proteins would be composed of amino acids of both handedness.
I discussed the question of how new genetic programs come de novo in my book, Information Theory in Molecular Biology published by CUP in 1992, see Section 12.3. Perhaps your inter library loan can find this book. I wrote it as a textbook and the mathematics scarred off most people. One must decide what can be put in one's book. Being too encyclopedic makes the book so large and expensive that very few will be sold.
A unique characteristic of mathematics is that once a theorem is proved that ends the debate. One may debate the pros and cons of income tax policy but not the theorem of Pythagoras! Only in an insane asylum.! ...I shall be very flattered if you post my comments. ...Thank you for suggesting the reader to buy the book. ...Yours very sincerely, Hubert P. Yockey
24 Apr 2005: Information Theory, Evolution and the Origin of Life, by Hubert Yockey — our review of this book.
Second Law of Thermodynamics | Fri, 13 May 2005 2:32:31 -0400 | Robert Fritzius
Dear Brig, ...I just found your article on second law of thermo. Nice! ...In 1909 Walter Ritz and Albert Einstein had a war over the source of the second law. Please see: The Ritz-Einstein Agreement to Disagree - http://www.datasync.com/~rsf1/rtzein.htm ...Best regards. ...Bob Fritzius | www.shadetreephysics.com.
The Second Law of Thermodynamics is the related CA webpage.
Panpermia Art | Thu, 28 Apr 2005 15:00:22 -0400
Paul.N.Grech@gsk.com
Hello Brig ...I just wanted to say that I am thoroughly enjoying your website and all the associated links. I am an artist from NJ, USA and I have recently started producing some art that has been inspired by various readings in science. I have attached a picture of a sculpture I just completed. It consists of an apple that has been "unzipped" to reveal a flurry of pollen-like structures that are about to be disseminated. It is entitled "Panspermic Apple". The picture is a bit blurry, my apologies, but hopefully it captures the essence of this interesting theory.
thanks, and keep up the good work! ...Paul Grech | www.pngconcepts.com
PS, 29 April: I am a huge proponent of the sciences, and am trying to fuse art with science in the hopes to encourage deeper thought among the various people with whom I come in contact.
Re: functional tRNAs from separate genes | from Dieter Söll
Thu, 31 Mar 2005 22:59:46 -0500
Dear Brig, Sorry for the late reply - I was away for three weeks. Your article is concise and correct. An evolutionary question in this case (as in others) is whether this small genome is a consequence of genome reduction or of an early stage in building a larger one. If it was the former model, then one could imagine that the intact tRNA genes got split during the reduction stage. Unfortunately, there is no function of the tRNA that could be carried out by the half molecules; thus, it is difficult to argue that the half molecules could carry out partial reactions of the current function of a tRNA. Best regards, Dieter
Dieter Söll | Department of Molecular Biophysics and Biochemistry | Yale University | http://trna.chem.yale.edu
Can pre-existing genetic programs be pieced together? is the related What'sNEW item, 28 Feb 2005.
13 things that do not make sense | from Jeff Nesin
Thu, 24 Mar 2005 16:14:32 +0000 (GMT)
Your friend thought you should see this article on New Scientist.com today. Follow the link below for the full story: "13 things that do not make sense." Their message: Thought of you
http://www.newscientist.com/article.ns?id=mg18524911.600
[The 6th item in the list is about the Labeled Release (LR) experiments on Mars: "JULY 20, 1976. On Mars, the Viking landers have scooped up some soil and mixed it with carbon-14-labelled nutrients. The mission's scientists have all agreed that if Levin's instruments on board the landers detect emissions of carbon-14-containing methane from the soil, then there must be life on Mars. Viking reports a positive result. Something is ingesting the nutrients, metabolising them, and then belching out gas laced with carbon-14."]
Life on Mars! is the related webpage.
The Ascent of Humanity | 10:27 PM, 17 Feb 2005 | from Charles Eisenstein
Dear Brig, We corresponded a while back about my upcoming book, The Ascent of Humanity. The bulk of the text is now finished and I'm halfway through the second draft, which I'm putting up on line as I complete each chapter. There is much in the book that is relevant to your site, as is not surprising given the number of valuable resources it pointed me toward. Anyway, my website (www.ascentofhumanity.com) links to panspermia.org, and I also mention you in the short essay I just posted there, entitled "Darwinism vs. Creationism: A Superficial Disagreement", which you might enjoy. Take care, and thanks for your valuable work.
Charles Eisenstein | www.ascentofhumanity.com
Complex early genes | to Dr. Scott Roy from Brig Klyce | 11:17 AM, Thu, 3 Feb 2005
Dear Dr. Roy -- I have read your subject paper with keen interest. I have a comment and a question. Comment: The word "origin" is often used without positive evidence. "Earliest known example" is usually all that's warranted. Question: Your cited evidence and references do not seem to justify your dismissal of "parallel insertion." (Also called "homing," I believe.) Do you have other reasons not stated in the paper?
The same comment and question are posted with my discussion of the article on my website about panspermia at http//www.panspermia.org/whatsne36.htm#050203. I would be honored by any reply from you.... Thank you and congratulations for the article. Best regards. ...Brig Klyce / Astrobiology Research Trust....
At 12:44 PM 2/3/2005, Dr. Scott Roy wrote: Dear Brig, In most or all cases, I use "origin" in the context of "these results push back the origin...to early eukaryotes." Whether or not the origin of complex genes goes back further is beyond the power of this data to resolve and likely unknowable (if, as seems likely, eukaryotes thought to be deeply diverging have lost nearly all of their introns, a notion supported by Collins and Penny's recent finding of a complex spliceosome in the common eukaryotic ancestor (MBE, 1/05). Both Wally and I have been long-time supporters of the notion that introns are extremely old, and we are not here trying to pinpoint their origin at the beginning of eukaryotes, only to say that, regardless of their ultimate origin, there were already a lot of them by early eukaryotic evolution.
I do have more direct evidence that the data cannot be explained by parallel insertion. In short 1) there are too many occurrences of protosplice sites in the studied regions to explain the two-way correspondences between deeply diverged species; 2) there are too many three-way correspondences between deeply diverged species; 3) numbers of introns shared between species varies widely between genes, as expected if different genes have different rates of intron evolution or if introns are lost in concert (e.g., Roy and Gilbert, "The pattern of intron loss", PNAS 1/05); 4) introns present in multiple outgroup species and a sister are not particularly more likely to be retained in a species than are those found in only a sister and single outgroup. This last one takes some more explaining, but I will leave that for a manuscipt currently in preparation.
You have misinterpreted our table. You say "the number of modern introns present in various ancestor species appears to increase as one looks deeper into the past, as the above table shows. (Going right, the numbers increase.)" This is twice wrong. First, species to the right are more recent, not more ancient. Secondly, this table is not talking about intron number in ancestral species, but the fraction of introns in modern species which were already present in the genomes of various ancestors. Estimated numbers of introns are given in the color figures.... Thanks for your interest. Best, Scott
At 04:10 PM 2/3/2005, Brig Klyce wrote: Dear Dr. Roy -- Many thanks for your kind reply. Of course I am embarrassed about misunderstanding your table. Thanks you for straightening me out. (I'll fix it.) Too often, I'm sure, my dumb mistakes remain because experts won't even reply to me. Thanks for your responsiveness. Congrats again on the study. ...Brig
Complex early genes is the related What'sNEW item, 3 Feb 2005.
Venter | from Thomas Ray | 01:54 PM 1/23/2005
Brig: Venter's statement is marvelous, and really strong. Congratulations! Tom.
20 Jan 2005: Panspermia is how life is spread throughout the universe — J. Craig Venter.
Craig Venter endorses panspermia | 0137 PM 1/21/2005
from MCKAY, DAVID S. (DAVE) (JSC-SA13) (NASA)
Brig, this is an important statement by Venter, and reinforces my own views that life travels around as microbes. The radiation effects are still a problem. These effects (DNA damage mainly) make it difficult or impossible for individual microbes to surive in space. That is why I am skeptical of the data from the India balloon flights. I think the Mars meteorite data (we are still absolutely convinced we are right about ALH84001, Nakhla, and some others--more papers will follow this year) suggest that the best and perhaps only way for microbes to travel around in space is within a radiation shielding system provided by rocks. The size of the rock determines the degree of shielding, and very large rocks such as whole asteroid masses may be possible for inter solar system travel.
I was not aware of the Edge.org site. It is very nice. I have put your site on my favorites list and will check it periodically. Feel free to alert me by email of new and exciting things. ...Dave
PS: These
views represent only my own and I am not speaking as a NASA representative.
0137 PM 1/21/2005 | from Brig Klyce: Dear Dave -- I am very encouraged by your email. Thank you! As for the balloon-recovered microbes -- if comets carry them most of the way (especially if some comets are small enough to go undetected), maybe they weren't exposed for very long, so they might have a greater-than-zero survival rate. Also, even if we found ET isotope ratios in radiation-killed bacteria only, that would still be interesting, wouldn't it?My son's AP Biology class recently invited me to tell them about panspermia. I proudly told them that I was acquainted with the guy who found the fossils in ALH84001. [...] I will watch for your future papers. Thanks again. Best regards. Brig
20 Jan 2005: Panspermia is how life is spread throughout the universe — J. Craig Venter.